Our uploaded dataset is in the masterVar file format used by Complete
Genomics, but that doesn't work with very many of the Galaxy tools.
Therefore we will convert it to pgSnp, which is a specialized BED
format for SNPs. In the tool panel, open the Phenotype Association
section and click on the tool called Convert CG MasterVar (red arrow).
Then in the center panel, select the dataset with the masterVar file
(red arrow), and click the Execute button (green arrow).
![[screen shot]](master2pgWithArrows.png)