The searches we are conducting now are more or less independent,
looking for SNPs that affect a variety of region types and functional
mechanisms, so rather than continuing from the PRP results, we will go
back and start yet again with our input dataset from Part 1. Once
again we are using the Intersect tool, this time to find the SNPs
within the DNase hypersensitive sites. Note that there are a lot more
regions in this set than there were in the PRPs (blue arrows).
![[screen shot]](hssIntersectWithArrows.png)