MAST - Motif Alignment and Search Tool
MAST version 3.0 (Release date: 2004/08/18 09:07:01)
For further information on how to interpret these results or to get
a copy of the MAST software please access http://meme.sdsc.edu.
REFERENCE
If you use this program in your research, please cite:
Timothy L. Bailey and Michael Gribskov,
"Combining evidence using p-values: application to sequence homology
searches", Bioinformatics, 14(48-54), 1998.
DATABASE AND MOTIFS
DATABASE upstream.txt (nucleotide)
Last updated on Thu Sep 15 14:33:42 2005
Database contains 3 sequences, 27003 residues
Scores for positive and reverse complement strands are combined.
MOTIFS (nucleotide)
MOTIF WIDTH BEST POSSIBLE MATCH
----- ----- -------------------
1 47 CTCCGCCCCTCCCCCCCCCCCCCCCGCCCCCCCCCCCCCCCGCCCCC
2 29 GGGGGAGGGGGTGGGGGGGAGGGAGAGAG
3 50 GCGCCTGCCCCCCCCGCGCGGCGCCGCGGGGCCCCCCGAGCTCCCCGCAC
4 34 AAGAGGAAAAAAAAAAGAAAGAAACAAAATCCTC
5 15 CCCCCCCCCCACCCC
6 25 TGTGTGTGTGTGTGTGTGTGTGTGT
7 19 AAGCCCCCCCAGCAGGAGG
8 15 GCGGCTCCGGGGAAG
9 39 GCGAGCCTTCCCCGGGGCGCAGACACACCTCCCCGCACC
10 15 TCCCTGGGTCTCCTG
11 15 TCACCCACCAAGTCC
12 15 TATTCCCACCTTGCA
13 35 TTTCAGTAATCCTCTCATAAGCCAACAACTCAGCT
14 35 CCCCCGCTCCCTGTGTGAGCCGAGCTCCCGACCAG
15 15 GGCTGGGGCGGGAAG
16 15 GCCGCTCCCCCCCGC
17 41 AATTTCCGCAAGTTCAAACAGTGAACCACCCTGGAGCTCGC
18 10 CGCACGCCCC
19 11 GGGACCCGGGG
20 14 CACCAAGGCGAGCC
PAIRWISE MOTIF CORRELATIONS:
MOTIF 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19
----- ----- ----- ----- ----- ----- ----- ----- ----- ----- ----- ----- ----- ----- ----- ----- ----- ----- ----- -----
2 0.06
3 0.41 0.16
4 0.08 0.35 0.14
5 0.50 0.01 0.44 0.16
6 0.10 0.10 0.16 0.06 0.14
7 0.45 0.27 0.50 0.28 0.27 0.03
8 0.37 0.38 0.48 0.32 0.18 0.17 0.38
9 0.30 0.10 0.28 0.10 0.36 0.27 0.27 0.42
10 0.29 0.09 0.36 0.20 0.36 0.38 0.08 0.25 0.40
11 0.45 0.08 0.46 0.28 0.37 0.24 0.24 0.31 0.38 0.31
12 0.46 0.18 0.28 0.15 0.23 0.22 0.27 0.13 0.41 0.20 0.23
13 0.11 0.20 0.12 0.14 0.26 0.22 0.16 0.24 0.22 0.37 0.30 0.34
14 0.19 0.16 0.24 0.17 0.39 0.22 0.26 0.34 0.16 0.31 0.30 0.31 0.22
15 0.21 0.44 0.38 0.39 0.04 0.15 0.35 0.47 0.32 0.07 0.46 0.21 0.37 0.34
16 0.57 0.11 0.62 0.12 0.32 0.18 0.45 0.41 0.45 0.15 0.33 0.20 0.16 0.32 0.26
17 0.22 0.22 0.22 0.19 0.32 0.10 0.32 0.28 0.24 0.53 0.36 0.32 0.17 0.32 0.23 0.32
18 0.57 0.09 0.51 0.23 0.52 0.10 0.56 0.28 0.39 0.17 0.38 0.30 0.22 0.38 0.27 0.62 0.49
19 0.42 0.47 0.54 0.35 0.05 0.23 0.44 0.57 0.46 0.26 0.32 0.15 0.22 0.32 0.41 0.43 0.40 0.28
20 0.36 0.28 0.41 0.31 0.17 0.01 0.44 0.24 0.38 0.09 0.36 0.16 0.23 0.37 0.30 0.29 0.39 0.38 0.45
Correlations above 0.60 may cause some combined p-values and
E-values to be underestimates.
Removing motifs 16 and 18 from the query may be advisable.
Random model letter frequencies (from non-redundant database):
A 0.281 C 0.222 G 0.229 T 0.267
SECTION I: HIGH-SCORING SEQUENCES
- Each of the following 3 sequences has E-value less than 10.
- The E-value of a sequence is the expected number of sequences
in a random database of the same size that would match the motifs as
well as the sequence does and is equal to the combined p-value of the
sequence times the number of sequences in the database.
- The combined p-value of a sequence measures the strength of the
match of the sequence to all the motifs and is calculated by
- finding the score of the single best match of each motif
to the sequence (best matches may overlap),
- calculating the sequence p-value of each score,
- forming the product of the p-values,
- taking the p-value of the product.
- The sequence p-value of a score is defined as the
probability of a random sequence of the same length containing
some match with as good or better a score.
- The score for the match of a position in a sequence to a motif
is computed by by summing the appropriate entry from each column of
the position-dependent scoring matrix that represents the motif.
- Sequences shorter than one or more of the motifs are skipped.
- The table is sorted by increasing E-value.
| Links | Sequence Name | Description | E-value | Length
|
|---|
|
| hg17.chr11:27675000-27685000:+:134
|
| 1.9e-104
| 10001
|
|
| hg17.chr11:27695000-27705000:+:134
|
| 5.2e-97
| 10001
|
|
| hg17.chr11:27653000-27660000:+:134
|
| 3.7e-16
| 7001
|
SECTION II: MOTIF DIAGRAMS
- The ordering and spacing of all non-overlapping motif occurrences
are shown for each high-scoring sequence listed in Section I.
- A motif occurrence is defined as a position in the sequence whose
match to the motif has POSITION p-value less than 0.0001.
- The POSITION p-value of a match is the probability of
a single random subsequence of the length of the motif
scoring at least as well as the observed match.
- For each sequence, all motif occurrences are shown unless there
are overlaps. In that case, a motif occurrence is shown only if its
p-value is less than the product of the p-values of the other
(lower-numbered) motif occurrences that it overlaps.
- The table also shows the E-value of each sequence.
- Spacers and motif occurences are indicated by
- occurrence of motif `n' with p-value less than 0.0001.
A minus sign indicates that the occurrence is on the
reverse complement strand.
- Sequences longer than 1000 are not shown to scale and are indicated by thicker lines.
| Links | Name | Expect | Motifs
|
|---|
|
| hg17.chr11:27675000-27685000:+:134
| 1.9e-104
|
| -2
|
| -6
| +2
|
| +4
|
| +14
|
| -10
|
| +12
|
| -15
|
| +4
|
| +11
|
| -4
|
| +4
|
| -6
|
| +7
|
| +4
|
| +18
|
| +1
|
| +10
| +1
|
| +11
|
| -8
| +11
|
| -15
|
| +17
|
| -1
|
| +8
|
| +3
|
| +5
|
| -5
|
| +9
|
| +10
|
| -19
|
| -5
|
| -3
|
| +5
|
| +9
|
| +3
|
| +7
|
| -3
|
| -1
|
| -3
|
| +1
|
| +3
| -19
|
| +5
|
| +11
|
| -7
|
| -7
| +1
|
| +2
|
| +18
|
| +5
|
| -2
|
| +9
|
| +7
|
| -10
|
| +4
|
| +8
|
| -5
|
| +15
|
| -16
|
| +2
|
| -15
|
| -11
|
| +1
|
| +10
|
| +10
|
| -5
|
| +13
|
| +11
|
| +6
|
| +10
|
| +17
|
| -2
|
| +12
|
| -14
|
| -13
|
| +12
|
| +13
|
| +4
|
| -12
|
| +4
|
| -4
|
| -5
|
| +2
|
| +15
|
| +10
|
| -10
|
|
|
|
|
| hg17.chr11:27695000-27705000:+:134
| 5.2e-97
|
| +12
|
| -2
|
| +4
|
| -5
|
| +12
|
| -13
|
| -4
|
| +6
|
| +15
|
| +4
|
| +1
|
| -5
|
| -19
|
| +1
|
| +14
|
| +10
|
| +5
|
| +8
|
| +2
|
| +3
|
| -3
|
| +16
|
| +1
|
| +1
| +11
| -3
|
| +1
|
| -9
| -8
|
| +3
|
| +4
|
| +2
|
| -1
|
| +2
|
| +6
|
| -2
|
| -6
|
| +4
|
| -4
|
| -12
|
| -2
|
| +17
|
| +17
|
| +14
|
| +7
|
| -14
|
| -2
|
| +5
|
| +5
|
| +17
|
| -6
|
| +13
|
| +8
|
| +15
|
| +2
|
| +5
|
| +2
|
| +20
|
| +14
|
| -16
|
| -1
|
| -8
|
| -7
|
| -1
|
| +11
|
| -12
|
| +4
|
| -1
|
| +7
|
| -10
|
| +3
|
| +20
|
| -10
|
| -15
|
| +5
|
| +10
|
| -13
|
| -13
|
| -7
|
| -6
|
| +13
|
| +2
|
| +12
|
| +14
|
| -13
|
| +12
|
| -11
|
| -4
|
| -2
|
| +2
|
| +20
|
| -15
|
|
|
|
|
| hg17.chr11:27653000-27660000:+:134
| 3.7e-16
|
| -10
|
| -6
|
| +2
|
| -6
|
| +13
|
| -5
|
| -3
|
| +13
|
| -2
|
| -12
|
| +11
|
| +13
|
| -1
|
| -5
|
| +10
|
| -12
|
| +19
|
| +13
|
| +4
|
| +12
|
| -12
|
| +10
|
| +10
|
| -12
|
| -10
|
| +12
|
| +13
|
| -4
|
| +2
|
| -12
|
| +14
|
| +4
|
| -5
|
| -10
|
| -10
|
|
|
|
| SCALE
|
| | |
| |
| |
| |
| |
| |
| |
| |
| |
| |
| |
| |
| |
| |
| |
| |
| |
| |
| |
| |
| |
| |
| |
| |
| |
| |
| |
| |
| |
| |
| |
| |
| |
| |
| |
| |
| |
| |
| |
| |
| |
| |
| |
| |
| |
| |
| |
| |
| |
| |
| |
| |
| |
| |
| |
| |
| |
| |
| |
| |
| |
| |
| |
| |
| |
| |
| |
| |
| |
| |
| |
| |
| |
| |
| |
| |
| |
| |
| |
| |
| |
| |
| |
| |
| |
| |
| |
| |
| |
| |
| |
| |
| |
| |
| 1 |
25 |
50 |
75 |
100 |
125 |
150 |
175 |
200 |
225 |
250 |
275 |
300 |
325 |
350 |
375 |
400 |
425 |
450 |
475 |
500 |
525 |
550 |
575 |
600 |
625 |
650 |
675 |
700 |
725 |
750 |
775 |
800 |
825 |
850 |
875 |
900 |
925 |
950 |
975 |
1000 |
1025 |
1050 |
1075 |
1100 |
1125 |
1150 |
1175 |
1200 |
1225 |
1250 |
1275 |
1300 |
1325 |
1350 |
1375 |
1400 |
1425 |
1450 |
1475 |
1500 |
1525 |
1550 |
1575 |
1600 |
1625 |
1650 |
1675 |
1700 |
1725 |
1750 |
1775 |
1800 |
1825 |
1850 |
1875 |
1900 |
1925 |
1950 |
1975 |
2000 |
2025 |
2050 |
2075 |
2100 |
2125 |
2150 |
2175 |
2200 |
2225 |
2250 |
2275 |
2300 |
2325 |
|
|---|
SECTION III: ANNOTATED SEQUENCES
- The positions and p-values of the non-overlapping motif occurrences
are shown above the actual sequence for each of the high-scoring
sequences from Section I.
- A motif occurrence is defined as a position in the sequence whose
match to the motif has POSITION p-value less than 0.0001 as
defined in Section II.
- For each sequence, the first line specifies the name of the sequence.
- The second (and possibly more) lines give a description of the
sequence.
- Following the description line(s) is a line giving the length,
combined p-value, and E-value of the sequence as defined in Section I.
- The next line reproduces the motif diagram from Section II.
- The entire sequence is printed on the following lines.
- Motif occurrences are indicated directly above their positions in the
sequence on lines showing
- the motif number of the occurrence (a minus sign indicates that
the occurrence is on the reverse complement strand),
- the position p-value of the occurrence,
- the best possible match to the motif (or its reverse complement), and
- columns whose match to the motif has a positive score (indicated
by a plus sign).
hg17.chr11:27675000-27685000:+:134452384
LENGTH = 10001 COMBINED P-VALUE = 6.25e-105 E-VALUE = 1.9e-104
DIAGRAM: 219-[-2]-15-[-6]-[+2]-17-[+4]-22-[+14]-117-[-10]-45-[+12]-34-[-15]- 523-[+4]-1-[+11]-55-[-4]-23-[+4]-199-[-6]-426-[+7]-11-[+4]-11-[+18]- 61-[+1]-59-[+10]-[+1]-29-[+11]-88-[-8]-[+11]-1-[-15]-48-[+17]-17- [-1]-110-[+8]-26-[+3]-15-[+5]-53-[-5]-1-[+9]-2-[+10]-29-[-19]-37- [-5]-79-[-3]-1-[+5]-3-[+9]-40-[+3]-20-[+7]-2-[-3]-4-[-1]-3-[-3]- 38-[+1]-44-[+3]-[-19]-2-[+5]-15-[+11]-2-[-7]-10-[-7]-[+1]-18-[+2]- 3-[+18]-6-[+5]-4-[-2]-17-[+9]-40-[+7]-160-[-10]-47-[+4]-38-[+8]- 62-[-5]-122-[+15]-15-[-16]-28-[+2]-166-[-15]-88-[-11]-12-[+1]-15- [+10]-204-[+10]-67-[-5]-63-[+13]-11-[+11]-22-[+6]-109-[+10]-188- [+17]-35-[-2]-109-[+12]-44-[-14]-970-[-13]-73-[+12]-319-[+13]-374- [+4]-45-[-12]-423-[+4]-493-[-4]-99-[-5]-70-[+2]-119-[+15]-268-[+10]- 69-[-10]-150
[-2
5.8
CTC
++
149 AAATTTCCTTAAGAGTAAGTCTACGATTGAGACCCAAAGCTGCTGGCTGTGTTATATTTCACAGTTCACAGTTC
] [-6] [+2]
e-11 4.0e-15 2.0e-11
TCTCCCTCCCCCCCACCCCCTCCCCC ACACACACACACACACACACACACAGGGGGAGG
++++++++++++ + ++++++++ + ++++++++++++++++++++++++++ +++++
223 TCTCTCTCTCTCTCTCCCCCTCTACACACACGCGCACGTGCACGCACACACACACACACACACACAGAGAGAGA
[+4]
6.0e-10
GGGTGGGGGGGAGGGAGAGAG AAGAGGAAAAAAAAAAGAAAGAAACAAAATCCTC
+ + + +++++++++++++++ ++++ +++ + ++++++++++ +++ ++++++++
297 GAGAGAGAGAGAGAGAGAGAGAGCACCCCAGGTTTTAGAAGATGAATGTAAAAAGAATGTAAACAAGTTCTCTG
[+14]
1.2e-15
CCCCCGCTCCCTGTGTGAGCCGAGCTCCCGACCAG
+++++++++ ++++++++++ +++++ ++ +++++
371 CTATACTATCAGGTGGGCGTGCCCAGCTCACTGTGCGTGCTGAACTACAAACCAGTGCTATTCATATAAGAAAT
[-10]
1.2e-07
CAGGAGACCCAGGGA
+++++++++++ +++
519 CATTTTCATGGCGCCCCTTTTAAACAGGAAACCCACGGACTTTGAGCCAGGATTTTAGAAATTTGCATTTCTTT
[+12] [-15]
2.8e-06 3.8e-05
TATTCCCACCTTGCA CTTCCCGCCCCAGCC
+++++++ +++++ ++++++ +++ +++
593 TTTTACAGGATTTTCCCTCCTGGTGAGTCAAAATGAACAAGAAATACCCCAGGACCTCCCTTCCCTCCTTGGCC
[+4] [+11]
7.8e-06 2.2e-07
AAGAGGAAAAAAAAAAGAAAGAAACAAAATCCTC TCACCCACCAAGTCC
+++ + + + +++++++++ + ++++ + +++ +++++++++++++++
1185 TTACAAAATGAAGTAGAAGAAAAAAAAGACAACGACTTTATGGCCCTGGAATTCCAGTAATGGTGACCAACATG
[-4]
2.7e-05
GAGGATTTTGTTTCTTTCTTTTTTTTTTCCTCTT
+++ + + ++++ ++++++++ + + + +
1259 TTTTAAATTCCAGTAAAGGTTATGGTTACATTTCAACAAGTGTCTCTTTCCTTTTTTTTACCTCTCCTGCTAAC
[+4]
9.6e-12
AAGAGGAAAAAAAAAAGAAAGAAACAAAATCCTC
++++ ++++++++++++++ +++++++++++++
1333 CCAGAGGTAAATTTCCCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGTCTTAAGCAAGGCATTTGCAAAATCA
[-6]
7.4e-06
ACACACACACACACACACACACACA
+ +++++++++ ++ +++ + ++
1555 AAAAATTATGTTGCATGAGATAAGCATTGAAGGCACACACGTTCATACAAATTAAATCTGTAATTATGCCTCAA
[+7] [+4]
9.1e-10 6.4e-10
AAGCCCCCCCAGCAGGAGG AAGAGGA
+++++++++++++ ++++ +++++ +
1999 CAAGAAGCCCTAACACACCGCCAATCGAGGCTTATCAAAGCTCCCCCAGCGCGAGGAAAACTTGCATAGAAGCC
[+18]
3.9e-07
AAAAAAAAAGAAAGAAACAAAATCCTC CGCACGCCCC
+++ ++++++ + ++ ++++++++++ ++++++++++
2073 AAACAAGAACGAGGAGTCAAAATCCACCGACGACGAGTCGCACGCCCCACCGAGCTGGAGTCAGCAGCACCATT
[+1]
3.2e-12
CTCCGCCCCTCCCCCCCCCCCCCCCGCCCCCCCCCCCCC
+++ +++ ++ + ++ + ++ + +++++ +++ +
2147 CAACAAGTCCCTCCTACCAGCTCTCTAAGGGATCCCGCAAAACCTTCCTTTACCACTTCCCCACCCCCAGCCTC
[+10]
1.2e-07
CCGCCCCC TCCCTGG
++++++++ +++++++
2221 CCGCCCCCAGTAGCTGCTCTTGGCAGCATGGCCGGCAGAGGGCACCCTCTACCTTCCCTAGCTTCGTTCTCTGG
[+1]
4.1e-14
GTCTCCTGCTCCGCCCCTCCCCCCCCCCCCCCCGCCCCCCCCCCCCCCCGCCCCC
+++ ++++++++ ++ + ++ ++++ ++ +++++ +++ + +++++++++ ++
2295 GTCCCCTCCTCCTCCTCGCCTCCCCTCCACCCCGGTCCCTCATCCCCGCTCTACCCCCAACACACAAACACTGC
[+11]
1.4e-07
TCACCCACCAAGTCC
+++++++++++++++
2369 ATCCTCCAGTTCACCCTCGCAGCCCCGAGGCTTCTTCCTTAGGGATGCCCCTAGTCTGTAATCTCCCCTTCTTC
[-8] [+11] [-15
5.6e-05 2.9e-07 1.3e
CTTCCCCGGAGCCGCTCACCCACCAAGTCC CTTC
+++ ++ ++++ +++++ ++++++++++ ++++
2443 TTGCCCGTCAGGCACAGAGCCCCCAATCCTCAGCTATTTCTTTCCAGGAGTAACTCACTCACCCATTCCTCTTC
] [+17]
-07 3.4e-15
CCGCCCCAGCC AATTTCCGCAAGTTC
+++ +++++++ + + ++++++++ +
2517 CCGGCTCTGCATCCCCAGAGACTAACCCGAGTCAAGAATCCCCCACGTACATCCCAACCACTCCCCGAAAGTCA
[-1]
7.7e-05
AAACAGTGAACCACCCTGGAGCTCGC GGGGGCGGGGGGGGGGGGGGGCGGGGGGGGG
+++++++ ++++ ++++++++ +++ ++ +++ + ++ + +++ +++ ++
2591 AAACTCTTAACTTCCCTGGAGGGCGCTTCAGAAGAGGGGCGCAGGATGGGTAGAGATGTGGGTTCGGCCTGCCC
GGGGGGAGGGGCGGAG
+++ + + + + +
2665 GAGAGTGTCGCAGACCCTTTCAGTTCCCAGCGGTAGGAATTCCGCCTCCCAAGTTTTCCAAGCTACATTGGCTT
[+8]
1.3e-09
GCGGCTCCGGGGAAG
++ ++++++++++++
2739 CGGACTTGTAAGTCCACTTCAGTCTCAATTCCTGGGGAGCAGGTAGCCGTGTGCAGCTCCGGGGAAGGGATGCG
[+3]
2.6e-15
GCGCCTGCCCCCCCCGCGCGGCGCCGCGGGGCCCCCCGAGCTCCCCGCAC
+ +++ ++++++++++ + +++++++++++++ +++++++++ +++++
2813 GGCTGAAGGCGCAAGCTTCCCTCCCACTCCCCCCGCAAGTCGGCGCGGGGACCACCCACCCCCTGGAAGGATTC
[+5]
2.3e-07
CCCCCCCCCCACCCC
+++ + ++++++++
2887 CTAGCCTAGCCCCAGCACCCTCCCCTCAGTCAGGACCCTCGACAGCTCTGGCCCCCTAAGTCTCTCTCGACTAC
[-5] [+9] [+10]
3.0e-08 2.5e-15 7.2e-08
GGGGTGGGGGGGGGG GCGAGCCTTCCCCGGGGCGCAGACACACCTCCCCGCACC TCCCTGGGTCTCC
+++ ++++++++++ +++++++ ++++++++ +++++ + +++++++ ++++ ++++++++++++
2961 TCCTGGGCTGGGGGAGGGCTGCGAGGGATCCCCGGGTCGCCGTCTTTGCTCCCATCACGCAGCTCTGGGTCTCC
[-19]
2.0e-07
TG CCCCGGGTCCC
++ +++++++++++
3035 TCCAGGCCTTCCCTCCTCTACTTCGTGACTTCCCCGGGTCCCTTTTTCCCTGGTGGTGCCGGCTGACCTTCTGG
[-5]
3.3e-05
GGGGTGGGGGGGGGG
+++ ++++++++
3109 GTTGTGGGATGGGGGAGAAAACTCCCCAAGAGTAACTCCAAATCGTCCCTTCTACCGGAGGGGAGGAAAGAAGG
[-3]
1.2e-13
GTGCGGGGAGCTCGGGGGGCCCCGCGGCGCCGCGCGGGGGGGGCAGGCG
++++++++++++++++ +++ +++++++++++++++++++++++ +
3183 AGACTGGCCTCGTCCCACAACTTTGGGGTGGGGGATCCCCCAGTCAACTCTCTCCCGCGGACGGGCAGCTCCTG
[+5] [+9]
8.4e-05 8.1e-16
C CCCCCCCCCCACCCC GCGAGCCTTCCCCGGGGCGCAGACACACCTCCCCGCACC
+ ++ ++++ + +++ ++ +++++ ++ +++++ +++++++ +++++ ++++ ++
3257 CACCAAGCCCCATTCCCAGCGCTTGCCTACCTCGGGGTCCACACAAACCTCACGGGTCCCCGGCGGCGGAGTCA
[+3]
2.1e-14
GCGCCTGCCCCCCCCGCGCGGCGCCGCGGGGCCCCCCGAGCTCCCCGCA
++++++ +++++++++++++ +++ + ++ ++ +++++ + ++++++++
3331 CATCGTGGTTCCGATTCTGGCTCCAGCGCCCAGCCCCGGTCCCCGTCGCGGTGCTGCTCCCCGCCGGCCCCACA
[+7] [-3]
7.8e-11 6.3e-14
C AAGCCCCCCCAGCAGGAGG GTGCGGGGAGCTCGGGGGGCCCCGCGGCGCCG
+ +++++++++ +++++++++ + + ++ +++++++++ +++ +++++++++ +
3405 GCAGCGGTGGGTGTCTCATTAAAGCCCCCCGAGCAGGAGGTGGAGGGGCGCACCGGGCTGGCTCCTCTGTCCGG
[-1] [-
1.5e-14 8.
CGCGGGGGGGGCAGGCGC GGGGGCGGGGGGGGGGGGGGGCGGGGGGGGGGGGGGGAGGGGCGGAG GT
++++++ +++++++++++ +++ +++++++ + + + + + + +++ + ++ ++++ + +++++++ +
3479 CCCGGGAGCCCGAGGCGCTACGGGGTGCGCGGGACAGCGAGCGGGCGGGTGCGCCCGGGCGCGGCGGCGGCAGC
3]
1e-15
GCGGGGAGCTCGGGGGGCCCCGCGGCGCCGCGCGGGGGGGGCAGGCGC
+++++++++++++ +++++++++++++++ +++++++++ +++++ +
3553 GTCGGGGACCCGGAGCTCCAGGCTGCGCCTTGCGCCCGGGTCAGACATTATTTAGCTCTTCGGTTGAGCTTCGA
[+1]
1.9e-25
CTCCGCCCCTCCCCCCCCCCCCCCCGCCCCCCCCCCCCCCCGCCCCC
+++++++++++++++++++++++++++++++++++++++++++ +++
3627 TTGGTCAAACGGCGCCGCCCCCCCCCCCCCGCCCCCCGCCCCCCGCTCCCCGCTCGCCCGCGCTACCGATACCC
[+3]
2.4e-18
GCGCCTGCCCCCCCCGCGCGGCGCCGCGGGGCCCCCCGAGCTCCC
++++++ +++ +++++++++ +++++++++++++++++++++++
3701 GTTCGAGGCGGCCGCTTAAAGGGAACGCCGCGTCTTTTCCTCGCGCGGGGAACCGAGGGGCGCCCGGAACTCCC
[-19] [+5] [+11] [-7]
3.2e-05 2.1e-07 1.4e-07 3.2e-09
CGCACCCCCGGGTCCC CCCCCCCCCCACCCC TCACCCACCAAGTCC CCTCCTGCT
+++ ++++++++ ++ ++ + ++ +++++++ +++++++++ +++++ + +++++++
3775 CGCTCCCCCGGGGCCTGTCCTCACCTCCTCCCCTAGGGCCCCGCGACATCGCCCTGCGAGTCCTGCGCCCTCCT
[-7] [+1]
6.0e-05 1.2e-12
GGGGGGGCTT CCTCCTGCTGGGGGGGCTTCTCCGCCCCTCCCCCCCCCCCCCCCGCCCCCCCCC
++++++++++ +++ + +++ + ++++++ +++ ++++ ++++ ++++ + +++++++
3849 GGGGCGCCTTGGACAGGACGCCCGCGGCTTCGAGGGGTGTTCCAGCCCCAGCCTCAGCCCCGGGGAACCCCGCG
[+2] [+18]
1.8e-12 3.9e-07
CCCCCCGCCCCC GGGGGAGGGGGTGGGGGGGAGGGAGAGAG CGCACGCCCC
+++++++++ + +++ + +++++ +++++++++++++ +++ ++++++++++
3923 TCCCGCGCCCTCTGCAGAAACCCCGGCTGTGGGCGCTGGGGCGGGAGGGAGCGAGTGAGAATCGCACGCCCCGA
[+5] [-2] [+9]
2.8e-05 2.8e-09 1.8e-
CCCCCCCCCCACCCC CTCTCTCCCTCCCCCCCACCCCCTCCCCC GCGAG
+ ++++++ + + +++++ ++ +++ +++++ ++++ + +++ +++++
3997 GGTCTCGCTCCCCTAGCTTTCAACTCTCCCCTTCCTCCCCATCCCAGCACCCAAGTTCTCTGGGAGAGGGCGTG
19
CCTTCCCCGGGGCGCAGACACACCTCCCCGCACC
++++ ++++++++ ++++++++++++++++++++
4071 CGTTTCCCGGGCCACAGACACACCTTCCCGCACCTTCCTGCACTACGGAGCTTGCGAACGCGAGCACACAATGA
[+7]
5.4e-05
AAGCCCCCCCAGCAGGAGG
++ + + + +++++++++
4145 AATCGCACAGAGCATGGGGGCTATTGGTTTACTCTGCTGCCTTAAACACGCCGGCTTAAACAGAGTTCGCGCAC
[-10]
1.4e-07
CAGGAGACCCAGGGA
+++++++++++++ +
4293 GATAACGTTACACCAAGTTACTTGTTCCAGCCAGGAAGCCCAGGCAATGACAGACCTCGCTAAAGCCACACGCT
[+4]
1.8e-11
AAGAGGAAAAAAAAAAGAAAGAAACAAAATCCTC
++++ + +++ ++++++++++++++ +++ ++++
4367 TTCTAGCCGACCAAACAGAAAAACGGAAAGAGAAAGAAAGAAAACAAACCCACCTTTTCAGTCACTACTTGTCA
[+8]
5.9e-09
GCGGCTCCGGGGAAG
++ ++++++++ +++
4441 AAGTAACCATCAAGGCAGCTGCTCCGGGAAAGACTTCGGCCCCAAAACTCCCACACTCTATTATTTTTTCACGT
[-5]
1.9e-07
GGGGTGGGGGGGGGG
++++++++++ + +
4515 TCCCTTCGCTTAATTAAAGGGGGGAGGGGGCGCGAGTCTTTGGTGCCCGGTATGTACTCCTTCTGTTCTGCAGC
[+15] [-16]
3.1e-08 3.5e-09
GGCTGGGGCGGGAAG GCGGGGGGGAGCGGC
+++++++++++++++ +++++++++++++++
4663 TTTGATCTCGGCAGAGGCAGGGAGATTTCATGCTAGTTCGCCGGGGGGAGCGGCAGCGAGAGCAGCCCTCTCCG
[+2]
3.3e-09
GGGGGAGGGGGTGGGGGGGAGGGAGAGAG
++++ ++ +++++++++ ++++++ +
4737 CGGTGAATGGGAAAGTGGGTGGGAGTCCACGAGAGGGCTCCACGGTGCCTTGACGTGCGCTGTCATATGATACC
[-15]
1.8e-08
CTTCCCGCCCCAGCC
+++++ +++++++++
4885 CTTTTATTAGAAGAGTTCCGTTCCAGGGCATTGCATGCTTTTGCAGATGTTTTCACTTCCAGCCCCAGCAAACA
[-11] [+1]
6.6e-05 5.1e-12
GGACTTGGTGGGTGA CTCCGCCCCTCCCCCCCCCCCCCCCGCCCCCCCCCCC
+ ++++++++++++ +++ + + +++ +++++++++ ++ +++++ ++ +
5033 GTGGGGGTAGGTGATTCGAGGGTGGGGGCAGAACTGGCTCAGTTAATCCTCCCCCGCCCTCCACCCCCACCACT
[+10]
7.4e-05
CCCCGCCCCC TCCCTGGGTCTCCTG
++++++ + + ++ ++ ++++ +
5107 GCCCGCAGCAAAAGAGCAAATAGCCTTTCGGGTTCTCATTTGCCTGTAGCCAAGACCCTTGAAGAGAACTTATA
[+10]
1.2e-08
TCCCTGGGTCTCCTG
+++++++ +++++++
5329 CAGTACCGTACTTAACTTGGAGTCCCTGGACCTCCTCGGAGCATAAAAATCACCTGGGTGAGTGTTAAAATGAA
[-5]
7.8e-08
GGGGTGGGGGGGGGG
+++++++++ ++++
5403 GGTCCCTCCTCCTGAAATTGTGATTTAGTAGGGGTGGGGCAGGGCCCAGGAGTTATAATTTTAATAAATACCAC
[+13]
1.1e-10
TTTCAGTAATCCTCTCATAAGCCAACAACTCAGCT
++++++ +++ +++++++++++ ++++++ + +++
5477 AAGCAATTCGAATGCAGACAATCTGAAGTCACACTTTGAGAAACACTCTCTTGGGGGTACAACACTGGGTATCA
[+11] [+6]
8.1e-09 5.3e-13
TCACCCACCAAGTCC TGTGTGTGTGTGTGTGTGTGTGTGT
+++++++++++++++ +++++++++++++++++ + +++++
5551 GAGGAATCTCCCACCAAGCCCACACCCAAATTCTGCAGGCAGCTTTCTGTGTGTGTGCGTTTTTCTGTAATCTC
[+10]
9.1e-06
TCCCTGGGTCTCCTG
+ +++++ ++ ++
5699 TAAAGGGAAAGATTTATAAACAGTTTCCTTTCCTGGACCCTCTTGTGGTTACCAAGAATGTGCTGTTGAACTGA
[+17]
9.5e-15
AATTTCCGCAAGTTCAAACAGTGAACCACCCTGGAGCTCGC
+++++ ++++ ++++++++++++++ ++++ +++ + ++
5921 GCCAGGAAATAATTTACCCACGTTCACACAGTGAAGTACCAGGGACAAGACTTCAGTGAACTCAAGAATTCCTG
[-2]
4.4e-09
CTCTCTCCCTCCCCCCCACCCCCTCCCCC
++ + +++ +++++++++++++++
5995 CTAGAAATAACCCTGCTTCCATCTCCCCCACCCCCTAAGTGAAGCTATCTGTTCCTTGGAAGTGTTATCAGAAT
[+12] [-14]
2.7e-05 7.2e-05
TATTCCCACCTTGCA CTGGTCGGGAGCT
+ ++ +++ ++ + ++ + ++ ++++
6143 GAGTGTCACACATTTAGCTTTGCACCTCTGTCAACTTGACAGAGCACATGACCAATACAAACTACCCTACAGCA
CGGCTCACACAGGGAGCGGGGG
+ + + +++ ++ ++ ++
6217 CAGATGGCAGAGTTTATTGTGGAATATTTAATGTATGTGAAATACGCAGGCTAACCAGAAAGCAATAAAGGACA
[-13]
2.7e-05
AGCTGAGTTGTTGGCTTATGAGAGGATTACTGAAA
+ + + + +++++++ ++ +++ +++ +
7179 GGCAAGGATGATGCTGAGAATATAGAGCATGCATTTCTCTTCTTCTTAAAAATTGGCCTCTGGCATAATTGATA
[+12]
3.2e-06
TATTCCCACC
++++ ++++
7253 TGTTAGGAGCAAAGTTTCCAAGTTTATAATCTGAACATTTTCTCTATTACTAAAATGAGGGAAAGTTTCACAGC
TTGCA
+++++
7327 TTGAAAAAATAATGCTACCTATTTCACTTTTGTGGGGCTTAAAAATTAATTGTGAATTCGTCTGAATCTTTATT
[+13]
9.8e-10
TTTCAGTAATCCTCTCATAAGCCAACAACTCAGCT
+++++++ +++++ ++++++++++ ++ + ++ +
7623 TTTATTTAAGCTTCCTAGTTACTCCTACCTTCAGTATTCCTTGCAAGAAAAAAAAAATAAGTTGTCTAGTCTAG
[+4]
3.3e-05
AAGAGGA
+ + +
7993 AAAATGTGTTCAAATTGGTCAACACCTGTTACAGGAGTTATGTAACCAGGCATAGCCATTAGTGGCAGACAAAA
[-
7.
AAAAAAAAAGAAAGAAACAAAATCCTC TG
+++ +++ ++ ++ ++ +++ +++++ +
8067 GAAAGGAACCACAGCAAGAAACTTTTAGAAGGGCCAAGACTAGGAGAGTAGAACAAGAGGGTCAAAAGCTGATC
12]
4e-07
CAAGGTGGGAATA
+++ +++++++++
8141 CCATCTGGGAATAATATTTAGTTGGATCAAGAAAAACGGCATAGAAACCATTAAGAAACTGTTGAGACTAAACC
[+4]
6.8e-06
AAGAGGAA
+++ ++
8511 CACCTATTTAGGCTGTGTGATGTTTGGAGTGAGAGATTTTCTACAGCCAAATTTTAAATTCTTCATGAAAAAAA
AAAAAAAAGAAAGAAACAAAATCCTC
+++++++++ + + +++ +++
8585 TGAAAAAGAAGAATATGCAAAAATAATTTAGAAAAAAATAAGTGAACTTCCTAAAGTCTTATTTTAAAAACACA
[-4]
5.1e-05
GAGGATTTTGTTTCTTTCTTTTTTTTTTCCTCTT
++++ +++ ++++ ++++ ++++ + ++ + +
9103 GGAAGTTTTGTTTTGTTTTATTTTCCCTTGCCGTAGGTTTGGTGTGTAGAAAGATGATGGTAAACATGCCCCTA
[-5]
1.7e-05
GGGGTGGGGGGGGG
+ ++ +++++++++
9177 GTGGCCAGGGGGTGGTAGTGATGGACAAGAAACTTGCTCCCAAAGCTGGAGTGGCACTTAGAGGCGGGGGAGGG
[+2
3.6
G GGG
+
9251 CCCACCACGGTTAATCAGTCCCCAGTTATTTCGGTTAGCAGTGTTTTACAAAAGGTAGACAAAAGAGAAGGAGT
]
e-09
GGAGGGGGTGGGGGGGAGGGAGAGAG
++++ +++++ ++++++++ + ++
9325 GGATAGGGTGAGAGGGAGGAAATCAGATAATTTTTGTTTGAGGCAAATAATTTTTCTAAATATGATAGATAGAC
[+1
1.1
GGC
+++
9399 CTATAAAAGATAGGTCCAGAAGGGATCTTAAGAGATTATCTCATCTTTCTCACTATTTATAGGCCTGTCATTGC
5]
e-05
TGGGGCGGGAAG
+++ ++++++
9473 AGACCAGGGAAGTAGACTACACATCCTTCTTTTGGGGAGCTATCTAGAATCCAGCAATGCTGGTGCTTGGAAGT
[+10]
1.7e-07
TCCCTGGGTCTCCTG
++++++ +++++++
9695 CTCACAACCTTTCTTCATAAACTCCAACTTTCAACCCATTAATCATTTCCCTTGGTCTACCCTGGACCTCCTCC
[-10]
1.3e-0
CAGGAG
++++++
9769 AAGATTTCTATATTTTTCTGAAAATGTGGAGCCCCAAACCAGACATGTGTGTGAAATTATCCAGGGCTCAGGAA
6
ACCCAGGGA
++ ++++
9843 ACACAGGAGTCATGAATTATCTGGACACAGCTGTTGGGAAAAACTAAAGGGAAGATTCAATCAGATTGACAAAT
hg17.chr11:27695000-27705000:+:134452384
LENGTH = 10001 COMBINED P-VALUE = 1.73e-97 E-VALUE = 5.2e-97
DIAGRAM: 59-[+12]-37-[-2]-39-[+4]-42-[-5]-250-[+12]-37-[-13]-163-[-4]-180- [+6]-235-[+15]-102-[+4]-55-[+1]-67-[-5]-69-[-19]-4-[+1]-86-[+14]- 16-[+10]-127-[+5]-26-[+8]-70-[+2]-10-[+3]-27-[-3]-15-[+16]-10-[+1]- 15-[+1]-[+11]-[-3]-10-[+1]-11-[-9]-[-8]-30-[+3]-48-[+4]-25-[+2]- 5-[-1]-2-[+2]-55-[+6]-9-[-2]-103-[-6]-22-[+4]-48-[-4]-25-[-12]- 27-[-2]-125-[+17]-35-[+17]-39-[+14]-131-[+7]-60-[-14]-92-[-2]-37- [+5]-184-[+5]-371-[+17]-45-[-6]-157-[+13]-38-[+8]-57-[+15]-71-[+2]- 80-[+5]-49-[+2]-94-[+20]-9-[+14]-67-[-16]-17-[-1]-33-[-8]-2-[-7]- 7-[-1]-15-[+11]-35-[-12]-55-[+4]-26-[-1]-46-[+7]-73-[-10]-22-[+3]- 58-[+20]-46-[-10]-38-[-15]-139-[+5]-196-[+10]-33-[-13]-17-[-13]- 54-[-7]-99-[-6]-306-[+13]-45-[+2]-25-[+12]-159-[+14]-3-[-13]-231- [+12]-124-[-11]-193-[-4]-71-[-2]-342-[+2]-614-[+20]-207-[-15]-224
[+12]
6.3e-05
TATTCCCACCTTGCA
+++++++ + ++ +
1 GTCCCAAAATTACAGAATTACAAAATAAAAACCCTTTGTAAGTCATGCTTTAATGCTGGTTTTCCCTCATTTCT
[-2]
5.1e-05
CTCTCTCCCTCCCCCCCACCCCCTCCCCC
+ ++ ++ ++++++ + + + ++ ++
75 GTTTCTTGGCTGATTATCTATTTTGTGGTCATCCAGTCCCTTGCCTTCTCTCTCGCTCACTGCCTGATTTTGGA
[+4]
1.2e-11
AAGAGGAAAAAAAAAAGAAAGAAACAAAATCCTC
+ ++++ ++ ++++++++++++++ ++++++++
149 ATGTTGTTTCTTACTAAAGCTTCCCCTAGAGGACAGGCCAGGAAAAGGAAAGAAACTAAATTCACCAGCTTCTC
[-5]
2.5e-05
GGGGTGGGGGGGGGG
+++ + + + ++
223 TTCTTATTAAGAATTTAGATCAGAAATCTGATAGGGAAAGAGTCTGGCAAATGAAAGGGGAAGCTTATTTATGT
[+12] [-13]
2.1e-07 9.7e-05
TATTCCCACCTTGCA AGCTGAGTTGTTGGCTTATG
+++++++++++++ ++++ ++++++++++++++
519 CTGCTTCCCAGTTTGCAAAGCCCTTATATATATTCTCTTCTATCCTCCAAAAATTGCTGTGTTGTAGGTCTTAC
AGAGGATTACTGAAA
+ +++++++ +
593 TATCAATGACACTGAAAAAGCTACTGGCAGGATGCTCATATTCTCATCTGAATCAATACTGGTATACTCCATTG
[-4]
9.4e-11
GAGGATTTTGTTTCTTTCTTTTTTTTTTCCTCTT
+++++++ + + +++++++++++++++ ++++++
741 AGGTTACTGTTAATTTAATAGCATCTAGGTTAAAATTCTCTCTCTTTCCTCTTTCTTCCCTTCTTCTCTCCATC
[+6]
7.2e-16
TGTGTGTGTGTGTGTGTGTGTGTGT
+++++++++++++++++++++++++
963 CCATGTCATCTTACAAGTTGAGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTAGAGGATGACGTGACACTTTT
[+15]
1.0e-07
GGCTGGGGCGGGAA
++ +++ +++++++
1185 GATGCATTCATTTGAAGCCCTAGCAACTGTATTAGGCAGCAGCGAGTATTCGCTAGCAAGGGATGGCGCGGGGA
G
+
1259 GAGGGAACTCTGCAATTTAGAGTGACAGATGATTTCTTTCCCATCCATCAAGCTGCCTCAAAATGTCACAATAT
[+4]
8.7e-10
AAGAGGAAAAAAAAAAGAAAGAAACAAAATCCTC
++++ ++++ +++ +++++++++++++ +++
1333 TTACACCTCTTTCTTGGTGAATTAGAATCCAGAGACAAGCAGACAGAAAGAAAAAAATAATAATTCCGGCCGGT
[+1]
1.7e-13
CTCCGCCCCTCCCCCCCCCCCCCCCGCCCC
++++ +++ +++++ ++ + + + +++
1407 TGCCGCCTGATTGGAAAAAGCAAGCGTTGCACCTTTAAATTCTGCTCCTCCATTCCCCGTTCCGCACACCACCC
CCCCCCCCCCCGCCCCC
++++++ ++++++++
1481 CCCCCCGCCCCTCCCGGGATTTTGCAATAAATCTCCCAGTTCTGCGTTCAGCCCTGCAGATCCGTATTTAAAAC
[-5]
3.8e-07
GGGGTGGGGGGGGGG
+++ ++++ +++ ++
1555 AGCACCATCTGGGAAGGGTGGGTGGCGATGGTGATGCGGGCGCCTTGGAGTTCCTTTGCAGCACGCTTGGAATT
[-19] [+1]
3.2e-05 1.7e-15
CCCCGGGTCCC CTCCGCCCCTCCCCCCCCCCCCCCCGCCCCCCCCCCCCC
+++++ + +++ +++ ++++++++++++ +++ ++++ +++ ++++ +++
1629 GCATCAGACTGATCAGAAATCCCCCCGCCCCCAAGCTCAGCCCCTCCCGCCACGCTCCCCTGCCCGCCCCTCCC
CCGCCCCC
+ ++++ +
1703 CTCCCCTCCCTTCGCGTAGATCTGACTGAGAAAACGACTGGATCTCGGAACAATCTGTGCCCCATTCGCTGCAG
[+14] [+1
6.2e-15 2.2
CCCCCGCTCCCTGTGTGAGCCGAGCTCCCGACCAG TCC
++ ++++++++ ++++++++++++ +++ + +++ +
1777 GCTTGCTCCGTAAACCCTGCCCTACGCTCCCTTTGTGTGCCGAGCAGCCTATCACCGTCATCTGATCCTAGCGC
0]
e-05
CTGGGTCTCCTG
+++ +++ ++
1851 CTGTTTTTTATCTTTTCCTTCTGAATTTCCACAATATCCTCGCTTCGCCTATGAATCCACCTGCGCAGAGTTGG
[+5]
3.1e-07
CCCCCCCCC
++ + ++++
1925 GATTCTTTCTTTCGTTCGTTAAAACAGTGGTCTTGAGTTTCGGAAACAGATTTTTCCTACGTTCCCCTCACCCC
[+8]
2.4e-05
CACCCC GCGGCTCCGGGGAAG
+++++ ++ + ++ +++++ +
1999 TACCCCAAGCTCTTGCCTTTTAATTAAGAAGAGCTGATCGGGGGAGGAGTCCAGAACGACCAAACCCTGGGGCG
[+2]
6.4e-09
GGGGGAGGGGGTGGGGGGGAGGGAGAGAG
+ + ++++++++++++ +++++ + ++
2073 AAAACTGCCACCGGGCTTGGCTCTGTGGCCGGAACAAAAGGCCTGAGAAGGGGGTGGGGGTGAGGGTTATAGGA
[+3]
2.0e-12
GCGCCTGCCCCCCCCGCGCGGCGCCGCGGGGCCCCCCGAGCTCCCCGCAC
+ ++ + +++++++++++ +++++++++ + +++ ++++++++ ++++
2147 GTGTGGAGAGCCTGGTGGCCCCCGCCCAGGGGCGCCTAAGTCCCTGAGCTCCCTGAAGAGTGGCAAGAGGATAA
[-3]
9.3e-14
GTGCGGGGAGCTCGGGGGGCCCCGCGGCGCCGCGCGGGGGGGGCAGGCGC
+++++++ +++++++ + ++++++ ++ + ++++++++++++++++++
2221 CGCAGCCGCGCGTTCCGGCAGTTCGCTGTCCCCCGGGGGTGCAGGCGGGGGCGGGAGAGGTAGAACACAGGTCT
[+16] [+1]
3.5e-09 9.0e-12
GCCGCTCCCCCCCGC CTCCGCCCCTCCCCCCCCCCCCCCCGCCCCCCCCCCCCCCCGCCCCC
+++++++++++++++ + + + + ++++ + ++ ++ +++ ++ ++ + ++++ ++++ +++
2295 GGGCGGCTCCGCGCCGCTTCTATCTCACCCGCCAAGCCCCTCACCTCCACCCACCGCCAGTCCCCTGCCCACCC
[+1] [+11]
1.7e-13 5.9e-05
CTCCGCCCCTCCCCCCCCCCCCCCCGCCCCCCCCCCCCCCCGCCCCCTCACCCACCAAG
+++ ++ +++ ++ +++++++ ++ ++ + ++++++ +++ ++++++++++++++
2369 GGGTGGCGGCGGCGGCTCAGCGACTAGCCGGCCGCCCTCCACCGGCGCCTCCGGACGCAACCTCGCCCTGGCAG
[-3] [+1]
9.6e-06 3.1e-14
TCCGTGCGGGGAGCTCGGGGGGCCCCGCGGCGCCGCGCGGGGGGGGCAGGCGC CTCCGCCCCTC
+++++ + ++++++ ++ + +++ ++++ ++ ++++ +++ ++ ++ ++ + +++++
2443 GGCGGTCTGCGCGTCCAGCTGATTGGTGGCTCTGTCCAGCCGCCGCACGGAGCTAAAAGTGTTCTTCTCCACCG
[-9]
8.1e-16
CCCCCCCCCCCCCCGCCCCCCCCCCCCCCCGCCCCC GGTGCGGGGAGGTGTGTCTGCGCCCCG
++ ++ ++ +++ + +++++ +++++ ++++ + + +++++++ +++++++ +++ + +++ +
2517 CCTCCAGCCGCCCAGGCCCCCTCGCCCGGCCCGCTCTCTGGCTCTTCGGTCCGGAAAGGACCTTCTACTCCCAG
[-8] [+3]
5.6e-05 1.7e-14
GGGAAGGCTCGCCTTCCCCGGAGCCGC GCGCCTGCCCCCCCCGC
+++++++++++++++ +++ +++ + ++ ++++++++++++++
2591 GCGGAGGCTCCCCTTTCCCTGAGTTACCCCGACTGACTCGGACCTGGGCTCAGTGAGGCATCCGGCCCGGCTGG
GCGGCGCCGCGGGGCCCCCCGAGCTCCCCGCAC
++ +++++++++++ + ++++++++++++ ++
2665 GGAGCGGAGCGCGGTCTCGGCAGCTCCCCTTCCCTTGAGAAAGCGGGAACCCTCTAAGCCAGCGCCCGAAACTC
[+4] [+2]
5.5e-10 1.7e-10
AAGAGGAAAAAAAAAAGAAAGAAACAAAATCCTC GGGGGAGG
++++++ ++++++ +++++ ++++ +++ ++++ +++ ++ +
2739 GCGGGGAGGGAGGACAGAAGGGAAAAAAAAAAGAAAACCCAGAAAGAAGCATCCAGCGAGGAGCGAGGGCGACG
[-1]
1.6e-14
GGGTGGGGGGGAGGGAGAGAG GGGGGCGGGGGGGGGGGGGGGCGGGGGGGGGGGGGGGAGGGGCGGAG
+ + ++++++++ +++ +++ + +++++ +++++ ++++++++++ ++ ++ ++++++ + + ++
2813 GAGAGGAAGAGATAGAATGAGGGAGGGATGGAGGCTGGAGGAGGGGGCGGGGTGGAAGAAGGGGGGCGGGAAGG
[+2]
2.9e-12
GGGGGAGGGGGTGGGGGGGAGGGAGAGAG
+++++ + +++ + +++++++++++++++
2887 AGGGAGGGAGGGGGAAAGAGAGGGAGGGAGGGATACAGAGAGAATGAATCCTTCTCACTAGAAGAGCTGAAATT
[+6] [-2]
7.0e-05 8.5e-10
TGTGTGTGTGTGTGTGTGTGTGTGT CTCTCTCCCTCCCCCCCACCCCCTCCCCC
+++ + +++++ + + + ++ + + ++++ +++ ++++++++ ++++++++
2961 ACCTTGATTCATTTTTTTGTGTTGGAGGTTTAGCTTTACCTCCTTCCCTCTTCCCAACCTCCACCTCCTCTCCC
[-6]
1.3e-13
ACACACACACACACACACACACACA
+++++++++++++++++++ +++++
3109 AGCTTCATAATTAGTAATGAATCTACTGTACACACACACACACACACCAGCAAAGAGAACGGAAAAGAGGGAGG
[+4]
7.0e-09
AAGAGGAAAAAAAAAAGAAAGAAACAAAATCCTC
+++++++ +++++++++ ++ ++ + + +++
3183 TGAAGAGGAGAAAAAGAGAGATAAATCTTACATTTGAATCAGACATTTGCAGGTCCAAGTTAACTAAACTCATT
[-4] [-12]
2.2e-11 1.1e-
GAGGATTTTGTTTCTTTCTTTTTTTTTTCCTCTT TGCAA
+++++++ +++++++++++++ +++ +++ +++ +++++
3257 ATATCCGCAGGAAGACTGAGTTTCTTTTTTTTCTTTCTCCCTTTGCCCCAGGGTTCTCACCTAGGGCAATTCAA
[-2]
06 6.0e-10
GGTGGGAATA CTCTCTCCCTCCCCCCCACCCCCTCCCCC
++++++ +++ ++++++++ ++++++++ + +++ + + +
3331 ACTGGGCAAATACCAAGAAACAACCCCCTCTCATGCTCTCCCTCTACCTCCTCCCCTCCACCACGCGTCCTCTC
[+17]
9.5e-17
AATTTCCGCAAGTTCAAACAGTGAACCACCC
++++++++++++++++ ++++ +++++++
3479 GCTTACACCACCCCGGTGGCTAGATCCTGGAGATAAACACTTGCATTTCCCAAAGTTAACCCAGTATACCAACC
[+17]
1.5e-14
TGGAGCTCGC AATTTCCGCAAGTTCAAACAGTGAACCAC
+++++++++ ++ +++ ++ +++++++ ++ + +++++
3553 CGGAGCTTGCCAAGAGTCTATTCCAGCCTACACCGCTAGGAAGCCAACTTCAGCGAGCTCAATGAGGGGACCAA
[+14]
2.9e-15
CCTGGAGCTCGC CCCCCGCTCCCTGTGTGAGCCGA
++++ ++++++ ++++++ ++ + +++++++++++
3627 ACTGGGGCTCGCTTTCCAAACGCTCCGCTCCAAAATCTGACTCTCTCTCCAGCCCCGATCTCAGTGTGAGCCGA
GCTCCCGACCAG
+++ ++++ ++
3701 ACCTCAGAAAAGACGCTTTTTAAGGGCGACACAGGGTTGGCTTTACAGCGGGGCCAAGAAGACTACCTGGGGGT
[+7]
7.5e-
AAGCC
+++++
3775 ACCGCCACCTCGGACAAATCCGTTGGCTCTGTCCAAGGTGCTGAATGGACTCCTATCGCCCGGATTACACACCC
09
CCCCCAGCAGGAGG
+ + ++++++++++
3849 GGCACAGCAGGAGGAAAAGGCTTAAAAATCTCTAATTAAGTGATACTTGATATTGCTCTAGACGGTTTCTTCCA
[-14]
2.3e-05
CTGGTCGGGAGCTCGGCTCACACAGGGAGCGGGGG
++ + + +++++ + ++++ + + +++ ++
3923 CTTCCTTACGGTTTGTCACGTGCGGATGGCTTTGCCAAAGCCATCCTGTTAATAGTTGATCACATGTTGATGAG
[-2]
2.3e-10
CTCTCTCCCTCCCCCCCACCC
+ + +++++++++++ ++++
3997 AACCTTTTCTTCTACGAGAGGATTACCCATTACCGGTGATATGCACTTCTGACTTATTTCTCTCCCCCCAACCC
[+5]
6.5e-08
CCTCCCCC CCCCCCCCCCACCCC
++ +++++ +++++ + +++++++
4071 CACCCCCCATCTACACCTAAACTCCCAGTCTTTACCCCACCCTTACCCCCACTCCACCCCCTAACCCCAACCTC
[+5]
3.1e-07
CCCCCCCCCCACCCC
++++++ ++++ + +
4293 GAACAACCAATATAACACACACCCCCCCACCCAGCTCCAAGTTTGTTCCACGCAGTTCCACATAGCTGTGTCAA
[+17]
1.3e-16
AATTTCCGCAAGTTCAAACAGTGAACCACCCTGGAG
+++ ++++++++++ +++++++ +++++++ +++ +
4663 ACCACTTGGTGTGACTTATGAATCTAATAACCCTTTGCAATATCCGCAAGCTTAAACTCTCAACCACCTTGGCG
[-6]
5.4e-06
CTCGC ACACACACACACACACACACACAC
+ +++ +++++ ++ + + +++ ++ +++
4737 ACTACAGAAGACAAAGCAACTGGCATCGATGTCGAAAAACCTATAGATTTACGCAAACGCCCTCACTCCGAGAG
A
+
4811 ACACGTTTCCTTTTGAGTTCTTACGTGATTCTAATGAATGAGCGAGGTTACCAATGATTGCCCAACTGCCCTGC
[+13]
1.8e-10
TTTCAGTAATCCTCTCATAAGCCAACAACTCAGCT
+++++++ +++++++++++++++ ++++++++
4959 AAGTGAGGAGTTTCAGGGTACCCCTGTAAAAAAAAAAACTCAGCCTGCACACCGCTCCCTTGCCCACTACGCAG
[+8]
4.8e-09
GCGGCTCCGGGGAAG
+++++++++++++++
5033 GTCACACCTGGGGCTCCGGCGAAGCTGAATTCGGCTCGGGAGATTTCCCTGTCGCCAGGTAAGAAAACCTTCGC
[+15]
1.1e-08
GGCTGGGGCGGGAAG
++++ ++++++++++
5107 CTTGTCAGGCTAGGGCGGGAAGACCGCTGGGGAACTTGTTGCTTATCAGCGCCGGCAGACTACCGCTTTAATAA
[+2]
1.4e-09
GGGGGAGGGGGTGGGGGGGAGGGAGAGAG
++++++++++++++++ +++ + ++ +
5181 TAATACCAGAAAAGCGCAGCAGGGAGGGGGTGGGGGGCGGCAACGGCGACGACTAACCTCGCTGTTTACGTGAC
[+5]
8.4e-10
CCCCCCCCCCACCCC
+++++++++++++++
5255 CGACTCACTGTGACTCTCTGGGTAAAAAAAGGAAACTTCTTAGAAAAGTTCGTGCCCCTCCCCCTCCCCCATCA
[+2]
3.0e-10
GGGGGAGGGGGTGGGGGGGAGGGAGAGAG
+++++ +++ +++++++++++++ ++
5329 TGACTAAGGGTCTCCAGCCGATGAGGTCGTGAGTGATGATCAAATGGGGACTGGGGGGAGGGGGGCGAGTAAGT
[+20] [+14]
4.1e-09 2.1e-14
CACCAAGGCGAGCC CCCCCGCTCCCTGTGTGAGCCGAGCTCCCGAC
++++++++++++++ ++ ++++ +++++++ ++++++++++ ++++
5477 CTGATGACTAGGCGAGAGGCACCAAGGCGAGCCACTAGTTGCCCACAGGAACCTGTGTAAGCCGAGCTCTCGAG
[-16
8.5e
CAG GCGG
+++ +++
5551 CGGCTGAGTTGAATGAAGTTATGACTGCGTTTGCTCTAATGGGTTATGGCTTCCCAAATGTGAGTTAACAGCCC
] [-1]
-05 1.8e-14
GGGGGAGCGGC GGGGGCGGGGGGGGGGGGGGGCGGGGGGGGGGGGGGGAGGGGCGGA
+++ + ++ ++ + ++++ +++++++ + ++++ ++ +++++++++++++ +++
5625 CGGTGCGCAGCTAGGTCGGAAGGCGAGCCGCGGAGAGCGGAGCCGCGGGCCAAGGCAGGGACGGGAGGGGAGGC
[-8] [-7]
3.8e-10 9.1e-10
G CTTCCCCGGAGCCGC CCTCCTGCTGGGGGGGCTT
+ +++++++++++++++ ++++++++++ ++++++++
5699 GGCAGGTTGGGCGCTCCGCTGCTGCTCGGTGCTGCTTCCCCGGAGCCGCTTCCTCATCCTGCGGGGGCTGCCCC
[-1] [+11]
3.4e-14 3.1e-08
GGGGGCGGGGGGGGGGGGGGGCGGGGGGGGGGGGGGGAGGGGCGGAG TCACCCACC
+ ++++ ++ ++++ + + ++++ +++ + +++++ ++++ ++++ +++++++++
5773 GCCGCCGGGGTGCCGGGGTGAGCGCGGCGGGAGCCAGGGCTGGGGTGGCGAACCTCGGAGGGGGCTCTCCCAGG
[-12]
6.1e-07
AAGTCC TGCAAGGTGGGAATA
++++++ ++++++++++++
5847 AAGCCCTGCGGTTAGCGCCCGCGCTTCCCCACCAGTGGCTGCGCAAGCTGGGAAGCGAAGAGGTCACGTGTTGG
[+4]
8.9e-14
AAGAGGAAAAAAAAAAGAAAGAAACAAAATCCTC
++++++++++++++ +++++++++++++ + +++
5921 CGGAAAGTAACTTGGAGGCGAAAGGATGAACTTTGAGAAGAGGAAAAAAAGCACAATGAAACAAACTACCCCCT
[-1]
1.2e-13
GGGGGCGGGGGGGGGGGGGGGCGGGGGGGGGGGGGGGAGGGGCGGAG
+ +++++++++++ ++ ++++++ + + ++++++++ + ++ +
5995 TGGAGTGTCTAATAGAGGGGGAGGCGGGAGGGGGGGCGGAGGGGCGCCGCTCTCCGCGGGAGATGTGGGGACGA
[+7]
1.9e-08
AAGCCCCCCCAGCAGGAGG
+++++++++++++ + +++
6069 CTCCGGAAATCTCGGGAAATAGGCAATAACTCGAGCTTTGGCAACGTCCCCCAGCCTAGGGAGGCGCTAACGCA
[-10]
1.7e-07
CAGGAGACCCAGGG
+++ +++ ++++++
6143 AGGTATCTTTCCACTGAAGCTGCCCTTTGCCTACCCTCAGCCATCGCTAGCACAGCAGAGCAGAAGAACCAGGG
[+3]
6.5e-05
A GCGCCTGCCCCCCCCGCGCGGCGCCGCGGGGCCCCCCGAGCTCCCCGCAC
+ + + +++ +++++ + ++ ++ + ++++ +++++ ++++++ ++
6217 ATGAATGTAGACCAGTTGTTATGGAGATGTCCGTCGCTCTGAGGAGCGCTAGTGCCCTGGGAAGTCCCCAGACG
[+20]
4.1e-09
CACCAAGGCGAGCC
++++++++++++++
6291 CATTTCAGGTTTCGTCGTTTTGGCACTGACACCATGATTTTACTCGCTCTGAGTTCCCACCAAGGGGAGCCCAC
[-10]
3.1e-05
CAGGAGACCCAGGGA
++ +++++ +++ ++
6365 CAACGGCGTCACAGGCCCTGGCCGTGGCGCTATTGACTGCAGGGATGAGGCACAGCGATGCTGCAGAAGATGGT
[-15]
1.2e-05
CTTCCCGCCCCAGCC
+ +++ ++++ + ++
6439 GGATAGCTCTTAAGTTTCAGACCACCCAGCCCTTTCCAATTTCCAGTTTCTTTATTCCAGTCAAAAGTGCTTTG
[+5]
5.0e-07
CCCCCCCCCCACCCC
+++++ ++++ +++
6587 TAAGCATTCAGTGGCTGCTTCAAGGTCCTCCCTCTCCCATCCCAGAAATGCCTTCCTTATGGAAAATAAGTTTT
[+10] [-13]
1.0e-06 5.2e-15
TCCCTGGGTCTCCTG AGCTGAGTT
+ +++++ ++++ + +++++++ +
6809 TATCTGTATACAAAAGCTTCCTGGTTCTCATTAGGAGTAGTTCTAGATTTGCCAGGCTCCTGGAGACCTGAGAT
[-13]
3.0e-11
GTTGGCTTATGAGAGGATTACTGAAA AGCTGAGTTGTTGGCTTATGAGAGGATTACT
+++++++++++++++++++ ++++++ ++ +++++++ ++++ ++++++++++++++
6883 GGGTCCTTATGAAAGGATTTCAGAAACCCTCACAGTCATCAACACAACAGTTCTCGCCAAATGAAAGGACTGCT
[-7]
5.0e-05
GAAA CCTCCTGCTGGGGGGG
++++ +++ + +++++ +++
6957 CAAATTGCCCACAAACTGCCACTTTTTGTCCATCCATGAATTAGCCAGCAGATGCTGCCCTAAGACTGGGACAG
CTT
+++
7031 CTGGTACATACCATTCTCAGAGGTCTTGGGGTACAGGCTTTGTGGACAAAACTGGTTTTTTGAGAATGGAATCC
[-6]
5.5e-05
ACACACACACACACACACACACACA
++ ++++ + ++ ++ +++++
7105 ATAATGCTGTTAATAACTTTCCTTGCCTACTGACAAATTCAATGACTAGCACAGATCTGCAATCTTGAAAAGAC
[+13]
1.1e-10
TTTCAGTAATC
++ +++++++
7401 CATTTAGACACATGATTGTACTGAAGATATTTCCCAAGAAATATGTTTAACCAGTGCTCTTATTTCTTGGAACC
[+2]
5.9e-
CTCTCATAAGCCAACAACTCAGCT GGGGG
++ ++++++++++++++++++++ +++++
7475 ATTACTAAAACCTCCAACTCAGGGACCAAAATGATGGACAAGAGTTGCTAAATAATAAGGGTTGATATAGGGAG
[+12]
06 3.7e-08
AGGGGGTGGGGGGGAGGGAGAGAG TATTCCCACCTTGCA
+ +++ + + ++ + +++ + + +++++++++++++ +
7549 CTAGGGAGAGTGGTGAAGATATGGTGTTTGCCATATATCTATATATACCTATTCCCACTTTGGATTTCTCAGTG
[+14] [-13]
4.2e-05 6.0e-05
CCCCCGCTCCCTGTGTGAGCCGAGCTCCCGACCAG AGCTGAGTTGTTGGCTTATGAGAGGATTACTGAAA
+++ +++ + + +++++ + + + ++ +++ + ++ + + +++++ +++++ + ++ ++ + +
7771 TGCCAAGCACTGTATGTGTCACAATTTTCATCTCAGTAGCACTTATTCCTGGGGTTATCTTATTTTTTCATACA
[+12]
9.1e-05
TATTCCCACCTTGCA
+++++ ++++++ +
8067 GCTGTTTAATATTCACAGTTTTCTACCTATGCCACAGTTATAAAGCTTGTTCTTTGCCCACATCTTTATGAAGA
[-11]
8.1e-09
GGACTTGGTGGGTGA
+++++++++++++++
8215 GGAATTGGTGGGAGATGGGTAACAAAGCAGGAGTCTACAAAGTCAGAAATGAAAGAGAACTCCTTTTTCTTAGA
[-4]
5.5e-05
GAGGATTTTGTTTC
+++ ++++ +++
8363 CACTTTTAATAGGATGGTTTGTGTATTCCTTACTATATATCAAGGAAGACAAAGATGAGATAGTACTTCCATTC
TTTCTTTTTTTTTTCCTCTT
++++++++ ++ +++
8437 TTTTCTCCCAACTTGTCTTTCCAAATCTATTTGGTTGTAGTTAATTTCCAGGCTCTCCATCTCACCTGGAGTTG
[-2]
1.5e-05
CTCTCTCCCTCCCCCCCACCCCCTCCCCC
++ +++ +++ + ++ + + +++
8511 GATAGATTATTTCCATCCTTCCTTCCCACTCTTACTTCTCCTTCCTTTTCAGTACTTATTCTGTGCCAGGGACT
[+2]
3.3e-05
GGGGGAGGGGGTGGGGGGGAGGGAGAGAG
++ ++ + + ++++ + +++ +
8881 TCTCTAATGGTTCTCCACAGGTAATAGAAGGAGAGGCAAAGAATCACGACACACAATTTGGAAAGCCTTCTGAA
[+20]
7.6e-
CACCA
++++
9473 AAAACTTAGGATCATGGAAAGGCAAGTGAAAATTAGTAAAAAGAGCCAATTTTATATCATGATAGGGCCTACCA
05
AGGCGAGCC
+++ + ++
9547 AGGTGTGCTTGACATCTAATCTGCCTAGAACATCTGGAAGGAAACTTTCACAGATGCTAAACTGTGCTTCTTAT
[-15]
1.8e-0
CTTCCC
+++ ++
9695 TTGGCATTTTCAACAGATTCCCAGGTGATATGAAGTTGTGCCACATTTTGCACAGCAAAATACTAAAGCTTGCT
8
GCCCCAGCC
+++++++++
9769 GCCCCAGCCTATGGTTTCATTTGCATTATGGCTTCATTAATACACTTCATTAGTAACTGAAGTGAATGCTATAT
hg17.chr11:27653000-27660000:+:134452384
LENGTH = 7001 COMBINED P-VALUE = 1.25e-16 E-VALUE = 3.7e-16
DIAGRAM: 115-[-10]-786-[-6]-28-[+2]-46-[-6]-244-[+13]-58-[-5]-67-[-3]-8- [+13]-692-[-2]-45-[-12]-68-[+11]-55-[+13]-54-[-1]-33-[-5]-331-[+10]- 71-[-12]-22-[+19]-637-[+13]-96-[+4]-169-[+12]-97-[-12]-23-[+10]- 21-[+10]-290-[-12]-73-[-10]-16-[+12]-232-[+13]-39-[-4]-319-[+2]- 250-[-12]-32-[+14]-80-[+4]-369-[-5]-98-[-10]-349-[-10]-261
[-10]
3.7e-05
CAGGAGACCCAGGGA
++++++++++++
76 AGGTAAATAATTTGATTATCCACCATTTATAGCTGAGGAAACTGAGGCCCAGAGAGTTTCGGTGGATTCCCTAAG
[-6] [+2]
4.6e-05 2.6e-0
ACACACACACACACACACACACACA GGGGGA
+ +++ ++ ++++ +++++++ + +
901 AGATGGTCCGGCATGGATAGAGCATCAGACACTCACAGACTGTGCCAACAAGAGCCATCGAGTCAAAACAGCCAA
[-6]
5 7.1e-0
GGGGGTGGGGGGGAGGGAGAGAG ACACAC
++ + +++ + +++ + + + ++ +
976 AGGAAGGAGGGTCATGGAATGGGTTCTCTCACACCAAACTGATGCCCAGAGGCCCTCAGCATGAATAACAAAGGC
5
ACACACACACACACACACA
+ ++ ++ ++++ ++ +
1051 AACCAGACCCACAAGCCATACTGAGTGGATACAAAACCTATACCTAGGCTGACATCCCAAATGTGTGTGGCAAGT
[+13]
1.1e-10
TTTCAGTAATCCTCTCATAAGCCAACAACTCAGCT
+++ +++++++ +++++++++++++ + ++++++
1276 AAAGAAAATGTCTATTTGTCAATGGTGTTTCAGCTAGATTTTGGCAGTCCATTCTTATGCCCAGGAATGACCTCT
[-5]
4.5e-06
GGGGTGGGGGGGGGG
+++++ + ++++ +
1351 TGTGTAGACTGGATACAGTCATCAATGCAACTGTCCAGGTGCAACTCTTCTATAAAGGGGAAGAGGAGTGACTTT
[-3]
3.3e-05
GTGCGGGGAGCT
+++++ ++++
1426 CCCCTATACAGTGGCCCTGTCAAAATTCTATAAAAAATATTGTCCATTTAAATTAAATAACCACTGTGCCCGGCT
[+13]
5.5e-05
CGGGGGGCCCCGCGGCGCCGCGCGGGGGGGGCAGGCGC TTTCAGTAATCCTCTCATAAGCCAACAAC
++ ++++ ++ + + ++++ ++ ++ + +++ +++ +++ ++++++ ++ +++++++ ++
1501 CCATTTACCACACTTTTCTATGCAGTGGAACTGAAGGGGATTTTTTTTTTTGCTGTCCTCAGAGAAAAATAAGAC
TCAGCT
+ ++
1576 TAAGAATCAACCTTTCTAATGAGAATGGTAAGGAGTTATGTGGGGATGACCTGGAATATATGCTGCTCAAATGGT
[-2]
2.2e-05
CTCTCTCCCTCCCCCCCACCCCCTCCCCC
+++ + +++ + ++ ++ + +++++ +
2251 ACTACGGATGGGGTAAAAGACTGCTCACCTCCTATTTCTCATCTAATCTCACACACTCTGTTTGATGAGGCTATG
[-12]
1.3e-06
TGCAAGGTGGGAATA
+ +++++++++ ++
2326 GAGAAACAGGTCTTCTCATACACTAAAGGTGGGAGTACAAACAATTCAAGCCCTGTGCAGGACAATTAGGCAATA
[+11]
8.3e-08
TCACCCACCAAGTCC
+++++++++++++++
2401 CCTATCAAAATTATACATGATTTTTCCTGCTGACCCAGCAATTCCACTTCTGGGAATAATTGACAGATATAGGTG
[+13]
4.2e-05
TTTCAGTAATCCTCTCATAAGCCAACAACTCAGCT
+ +++ ++ +++++ ++++ +++ + +
2476 CATATGTACAAAATGATGGAAAGCTCTCTGGTATATATTAGTAAGTGATAAAACAAGGTGTAAAATAGTGTATAT
[-1]
4.6e-05
GGGGGCGGGGGGGGGGGGGGGCGGGGGGGGGGGGGG
++ ++ ++++ + + + + + + + ++
2551 ATGGCTACTACCTTTTGTTTTAAAAATGGGGGAAAATGGTGGAGCTTGCGGTGAGCCGAGATCGTGCCACTGCAC
[-5]
1.5e-07
GAGGGGCGGAG GGGGTGGGGGGGGGG
+ + + + ++++++++ +++++
2626 TCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAACAGGGTGGGGTGGGGGGGAAATAATAGTACAT
[+10]
7.9e-05
TCCCTGGGTCTCCTG
+ + ++ +++++++
3001 TTACACCAGTTCCTTTGCTTGTTTTTCCTGGTAATGACTACAATTAAGAAGTCCTGTGGGTGCCATCTCAGTTTT
[-12] [+19]
3.7e-07 2.0e-07
TGCAAGGTGGGAATA GGGACCCGGGG
++++++++++++ ++ +++++++++++
3076 GGAGATATTTCCCTAGAAGAAACTGATTCAAGGTGGGACAATTGGGTATAGAGAATAGTCCCTGGGACCGGGGGC
[+13]
3.0e-11
TTTCAGTAATCCTCTCATAAGCCAACAACTCAGCT
+ ++++++++ + + ++++++++++++++++++++
3751 CTTAGTCCTTGTGAACATATAGTTGTTGGAGACATGTGTCTGTCATACACAGATAGGCCTCCAACTCACCTCTGA
[+4]
4.3e-09
AAGAGGAAAAAAAAAAGAAAGAAACAAAATCCTC
+++ ++ ++++++++++ + ++++++ +++++
3901 GAAAAACCATTCTTTAAAAGGGGTTAAAAAAAACACTCAAAAAACTTCTCCTTTCCACATGTATAGTCATCTGGA
[+12]
6.0e-
TATTC
++ ++
4051 CTTCCTCACCCTCCTAAAACGAAACATTCCAATAGGCTAGAAATAACCTCATGAGGAAGTTCATTGAAGGTACTC
08
CCACCTTGCA
++++++++++
4126 CCACTTGGCACTACTATCCAGACACTGGGTTAGGAAACTAGTTACTTGGAACTCAGAAAAAATAAGAACTATTTT
[-12] [+10]
7.1e-05 2.2e-
TGCAAGGTGGGAATA TCCCT
+++++++++++ + +++
4201 GATTAGGCAAGGCCCCTGTGCAAGGTGCCTAGTTCCAGCTGGGTCTCAGTAGTCTGATGGGTGTCATGCACTCCT
[+10]
07 9.4e-05
GGGTCTCCTG TCCCTGGGTCTCCTG
++ +++++++ ++ ++++++ + ++
4276 GGACCTCCTCTTAATGAAACAAGGGACCTTGACTTTGGGCCCCATGTTGAGAAGCTCTGAAGCCAAATATAATGG
[-12]
1.8e-09
TGCAAGGTGGGAATA
+++++++++++++++
4576 CTTTGCTTTAGGAAAATCATTTTCAAGGTTGCTTCATGCAAAGTGGGAATAATTAACTTGGTAACTCAATAGACT
[-10]
3.1e-07
CAGGAGACCCAGGGA
++ ++++ +++++++
4651 TGCTAAGTGATTGCCCCAAGTTTAAACTGTCACTGATTTGCAAGTATGACATGAAAACCAGAGACCCAAGGAGGT
[+12]
1.2e-06
TATTCCCACCTTGCA
+++++++++++ ++
4726 GGGCACATTCCCACCTGTCAATAGCCCTCAAGAGAAGTGCTTCAGTATTACCCCAAATGGCCAACTTTGCATGGT
[+13]
4.9e-14
TTTCAGTAATCCTCTCATAAGCCAACAACTCAGCT
++++++++++ ++++++++++++++++++++++++
4951 TGAAGCTGAAAGTCAGAACCAGCTGTGTTTCTGTCATTCCCTCATATGAAAAGAACTCAGCTGTAGACCTTTACT
[-4]
8.7e-05
GAGGATTTTGTTTCTTTCTTTTTTTTTTCCTCTT
+ ++ + ++++ + ++++ +++++++++++
5026 CCATGAGAAAACATTTTTTAAAAACCCACAAATAATTTTTAGGTTTCATTTTTGCCTCTGCTTTCTCCAGAGCTA
[+2]
5.5e-08
GGGGGAGGGGGTGGGGGGGAGGGAGAGAG
+ + ++ +++ ++++++ +++ + ++++
5401 AGAATGAAAAGAGGGAGGAAGGTGGCAAAGGAGAAAGGCCTTTGGCCCAAGTTTTTGTTCAATAAAGATCATATT
[-12]
9.5e-07
TGCAAGGTGGGAATA
+++++ + +++++++
5626 CTGATTTCCTATTCAGAGTGCCTTCCTAGCTGATAAGAACAATACTGAAATCTTTCTTTTCCATGAGGGAAAAAC
[+14]
1.0e-05
CCCCCGCTCCCTGTGTGAGCCGAGCTCCCGACCAG
+++ + + +++ ++++++ +++ + + ++ +
5701 ATGTTGAATCATTTAGCAAGTACCTACAGAGCCACCTACTATGTATGTGCCCAGCAGTCTACTGTGTGCTATCAG
[+4]
4.0e-
AAGAG
+ +
5776 GAGTAAGAAAATGTAGAAATATTCTTGCTTTTAAAGGGTTTACAATCTAATTGTAGAAATAATACTAAAATACAT
05
GAAAAAAAAAAGAAAGAAACAAAATCCTC
++ ++ +++ ++++ ++++ ++ +++
5851 GAGAGGAAAGAAAAGCAAACTTAGCTTCTCTGGGATAAGGACTATATCTCATGCAACTTTTAAAAAGTTACCATT
[-5]
4.7e-05
GGGGTGGGGGGGGGG
++ +++++++ ++
6226 GCAAGTTCCCTTGTGGAAACACAAGGATGGGGGAAAGGGATTTCCCTCAACATTGTTCTATCTACACACAGAGAA
[-10]
2.8e-05
CAGGAGACCCAGGG
++ +++ +++++
6301 TTCAAGTAACTTGCCCAAAATCACAGAGCTAGTAAGTGGTGAGGCTTAAATCAAACTTGATCATCAGGTCCAGGA
A
+
6376 ACACAGGTACAGGCTGGGGCTGCCTCATGAAGTGTCTGTTTAGGAAATGTGTCTTTAAAGTCAACAGACTGTCCT
[-10]
6.0e-07
CAGGAGACCCAGGGA
++ +++++ ++++++
6676 AATGAGTAGAATTCAGATGAATAAACAGCAGAAAAAATCATTAATAAACACATGAGACTCAGAGAATTACAACAA
Debugging Information
CPU: compute-0-0.local
Time 0.780000 secs.
mast meme.6132.results meme.6132.data -mf -df upstream.txt -stdout
Button Help
Links to Entrez database at NCBI
Links to sequence scores (section I)
Links to motif diagrams (section II)
Links to sequence/motif annotated alignments (section III)
This information