MKAR software
Prerequisites:
Python
and
bx-python
R project
and
qvalue package
Perl or your favorite scripting language for parsing results.
MKAR program files:
MKAR_window_EXP.py
maf_mask_snp.py
maf_to_bed.py
run_MKAR.py
computeQvals.r
Example makefile
Documentation:
MKAR datasets