Viewing the prepared input

Click on the eye icon to see the summary of the composite dataset. The results are in the admix.ped and admix.map files. The most important thing to note is the number of SNPs that passed this filter. We want this to be at least one hundred thousand, so once again we are good. If we had used too high of a minimum read coverage, we would need to rerun the Prepare Input tool again with a lower value before continuing.